Should I stop using Vortex for mods?

These are all the mods I’ve got in my plugins folder. Every time I open the game, multiple files are taken out of where they belong and transplanted into the wrong folders (structure and optoctreepatch being put in the main Plugins folder, some mods being taken from plugins into the bepinex folder.) If I were to just cut out the mods from bepinex, delete bepinex (the one installed by vortex), reinstall bepinex manually, and put the files back into their respective folders, would it work out well?

These are all the mods I’ve got in my plugins folder. Every time I open the game, multiple files are taken out of where they belong and transplanted into the wrong folders (structure and optoctreepatch being put in the main Plugins folder, some mods being taken from plugins into the bepinex folder.) If I were to just cut out the mods from bepinex, delete bepinex (the one installed by vortex), reinstall bepinex manually, and put the files back into their respective folders, would it work out well?